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- Description:
- The simulations associated with this dataset form part of a broader investigation into the effects of heterogeneity in tall vegetated canopies, designed to emulate structural and aerodynamic characteristics of the Amazon rainforest. All cases are forced by a geostrophic wind of 9 m s⁻¹ under neutrally stratified conditions. The vegetated canopy configurations feature a vegetation cover with circular gaps composed of bare soil that are randomly distributed over the domain. The numerical value in each gap case name corresponds to the diameter of the gaps, D, expressed in meters after multiplication by a factor of 100. Thus: the configuration labeled “Gap_12_8_9mps” refers to gaps with D = 1200 m and D = 800 m, and the configuration labeled “Gap_12_8_4_9mps” refers to gaps with D = 1200 m, D = 800 m, and D = 400 m. Across all configurations, the canopy height is fixed at hc = 39 m, and the vegetation is characterized by a vertically distributed leaf area density, with a Leaf Area Index (LAI) of 7.05. Simulations were conducted using a Large-Eddy Simulation (LES) domain of size (Lx, Ly, Lz) = (2π, 2π, 1) km, where x, y, and z denote the streamwise, spanwise, and vertical directions. The computational grid consists of (Nx, Ny, Nz) = (256,256,256) points, yielding a spatial resolution of (Δx, Δy, Δz) = (24.5, 24.5, 3.9) m. An aerodynamic roughness length of z0 = 0.01 m is imposed at the surface. Time integration employs a fixed time step of Δt = 0.05 s. Simulations are spun up for 25 h, and data are sampled over the final 5 h of integration. To facilitate data access, a MATLAB script (main_load_snapshots.m) and a supporting function (load_snaps.m) are provided. These scripts load the binary files and organize them into 4D arrays for subsequent analysis. and See README file for data retrieval instructions.
- Keyword:
- Vegetated canopies, Large Eddy Simulations, Instantaneous velocity fields, Quadrant Analysis, and Roughness Sublayer Flow Statistics
- Subject:
- Turbulence, Atmospheric science, and Computational fluid dynamics
- Creator:
- Salmaso, Giulia and Calaf, Marc
- Owner:
- Kaylee Alexander
- Based Near Label Tesim:
- Salt Lake City, Utah, United States
- Language:
- binary
- Date Uploaded:
- 06/06/2025
- Date Modified:
- 06/10/2025
- Date Created:
- 2022-01-01 to 2025-05-29
- License:
- CC BY NC - Allows others to use and share your data non-commercially and with attribution.
- Resource Type:
- Dataset
- Identifier:
- https://doi.org/10.7278/S5d-44de-p0td
-
- Description:
- Classification of barrier island morphology stems from the seminal work of M. O. Hayes and others, which linked island shape to tidal range and wave height and defined coastal energy regimes (i.e., wave-dominated, mixed energy, tide-dominated). If true, this general relationship represents a process-based framework to link modern and ancient systems, and is key for determining paleomorphodynamic relationships. Here we present a new semi-global database of barrier islands and spits (n = 702). Shape parameters (aspect, circularity, and roundness) are used to quantify island boundary shape, and assess potential correlation with coastal energy regime using global wave and tide models. In adopting the original energy classification as originally put forth (i.e., wave dominated, wave-influenced mixed, tide-influenced mixed, tide dominated), results show that wave-dominated islands have statistically different mean shape values from those in the mixed energy fields, but the two mixed energy designations are not distinct from each other. Furthermore, each energy regime field contains a wide range of island shapes, with no clear trends present. Linear regression modeling shows that tidal range and wave height account for < 10% of the documented variance in island shape, a strong indication that other controls must be considered. Therefore, while energy regime distinctions can be used descriptively, their utility in predicting and constraining island shape is limited: barrier island shape is not indicative of coastal energy regime, and vice versa. Our analysis also demonstrates empirical scaling relationships among modern barrier islands for the first time, with implications for subsurface prediction. and This is the dataset of the Modern Barrier Island Database published in Mulhern et al., 2017 Marine Geology paper titled "Is Barrier Island Morphology a Function of Wave and Tide Regime?" with the DOI https://doi.org/10.1016/j.margeo.2017.02.016. If using this dataset please cite both the dataset and the paper.
- Keyword:
- paleomorphodynamic relationships, geology, barrier island, shallow marine, island shape, wave-dominated islands, shoreline morphology, Modern Barrier Island Database, and coastal geomorphology
- Subject:
- Geology
- Creator:
- Johnson, Cari L., Mulhern, Julia S., and Martin, John M.
- Owner:
- Julia Mulhern
- Language:
- English
- Date Uploaded:
- 09/08/2021
- Date Modified:
- 06/03/2024
- Date Created:
- 2015-01-01 to 2017-12-31
- License:
- CC BY NC - Allows others to use and share your data non-commercially and with attribution.
- Resource Type:
- Dataset
- Identifier:
- https://doi.org/10.7278/S50d-5pzj-r9vr
-
- Description:
- While several studies have qualitatively investigated age- and region-dependent adhesion between the vitreous and retina, no studies have directly measured the vitreoretinal strength of adhesion. In this study, we developed a rotational peel device and associated methodology to measure the maximum and steady-state peel forces between the vitreous and the retina. Vitreoretinal adhesion in the equator and posterior pole were measured in human eyes from donors ranging 30 to 79 years of age, and in sheep eyes from premature, neonatal, young lamb, and young adult sheep. In human eyes, maximum peel force in the equator (7.24 ± 4.13 mN) was greater than in the posterior pole (4.08 ± 2.03 mN). This trend was especially evident for younger eyes from donors 30 to 39 years of age. After 60 years of age, there was a significant decrease in the maximum equatorial (4.69 ± 2.52 mN, p = 0.016) and posterior pole adhesion (2.95 ± 1.25 mN, p = 0.037). In immature sheep eyes, maximum adhesion was 7.60 ± 3.06 mN, and did not significantly differ between the equator and posterior pole until young adulthood. At this age, the maximum adhesion in the equator nearly doubled (16.67 ± 7.45 mN) that of the posterior pole, similar to the young adult human eyes. Light microscopy images suggest more disruption of the inner limiting membrane (ILM) in immature sheep eyes compared to adult sheep eyes. Interestingly, in human eyes, ILM disruption was significantly greater in the posterior pole (p < 0.05) and in people over 60 years of age (p < 0.02). These findings supplement the current discussion surrounding age-related posterior vitreous detachment, and the risk factors and physiological progressions associated with this condition. In addition, these data further our understanding of the biomechanical mechanisms of vitreoretinal adhesion, and can be used to develop age- appropriate computational models simulating retinal detachment, hemorrhaging, or retinal trauma. See Creveling CJ, Colter J, Coats B. 2018. Changes in vitreoretinal adhesion with age and region in human and sheep eyes. Frontiers in Bioengineering and Biotechnology 6. https://doi.org/10.3389/fbioe.2018.00153.
- Keyword:
- ophthalmology, retina, vitreous, adhesion, ocular, human, eye, peel test, and sheep
- Subject:
- Quantitative measurement and Vitreoretinal adhesion
- Creator:
- Coats, Brittany and Creveling, Christopher
- Contributor:
- Colter, Jourdan
- Owner:
- BRIAN MCBRIDE
- Based Near Label Tesim:
- Salt Lake City, Utah, United States
- Language:
- English
- Date Uploaded:
- 07/10/2019
- Date Modified:
- 06/03/2024
- Date Created:
- Completed 2017-06-01
- License:
- CC BY – Allows others to use and share your data, even commercially, with attribution.
- Resource Type:
- Image, Dataset, and Video
- Identifier:
- https://doi.org/10.7278/S5BK19H3
-
- Description:
- Three distinct datasets derived from https://ccmc.gsfc.nasa.gov/models/IRI~2016/. NeVLFpropinclin5.dat - Electron density profile collected from https://ccmc.gsfc.nasa.gov/models/IRI~2016/ for Jan 2020 at a resolution of 1km, then interpolated smoothly to a resolution of 0.1km with no abrupt jumps. NiVLFpropinclin5.dat - O+ ion density profile taken from https://ccmc.gsfc.nasa.gov/models/IRI~2016/ for Jan 2020 at a resolution of 1km, then interpolated smoothly to a resolution of 0.1km with no abrupt jumps. NiHplusVLFpropinclin5HighlatAmerica.dat - H+ ion density profile collected from https://ccmc.gsfc.nasa.gov/models/IRI~2016/ for Jan 2020 at a resolution of 1km, then interpolated smoothly to a resolution of 0.1km with no abrupt jumps.
- Keyword:
- Electron density, FDTD, IRI, Ion density, and ionosphere
- Subject:
- ionosphere, Ionospheric electron density, and electrons
- Creator:
- Pedgaonkar, Apoorva
- Owner:
- Madison Golden
- Date Uploaded:
- 06/09/2025
- Date Modified:
- 06/09/2025
- Date Created:
- 2024-07-12 to 2025-03-05
- License:
- Public Domain – This data is free of copyright restrictions (e.g. government sponsored data).
- Identifier:
- https://doi.org/10.7278/S5d-khd5-xqhg
-
- Description:
- This dataset is a custom Kraken2 formatted database for the identification of Fungi from shotgun metagenomic data. Kraken2 is a k-mer based read classifier (Wood et al. 2019; https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1891-0). The dataset was built with the default k-mer length (k=35) from all publicly available fungal genomes at JGI Mycocosm ( https://mycocosm.jgi.doe.gov/mycocosm/home), and all archaea, bacteria, viral, plasmid, human, fungi, plant, and protozoa genomes, as well as the UniVec Core and nt reference database at NCBI ( https://www.ncbi.nlm.nih.gov/). The reference genomes and sequences were downloaded from JGI and NCBI in March 2020.
- Keyword:
- protozoa, Kraken2 database, plant, bacteria, genomes, fungi, human, archaea, plasmid, and virus
- Subject:
- Mycology and Genomics
- Creator:
- Dentinger, Bryn T. M.
- Owner:
- Bryn Dentinger
- Language:
- English
- Date Uploaded:
- 06/08/2022
- Date Modified:
- 06/03/2024
- Date Created:
- 2020-03-29
- License:
- CC BY NC - Allows others to use and share your data non-commercially and with attribution.
- Resource Type:
- Software or Program Code and Dataset
- Identifier:
- https://doi.org/10.7278/S50d-154b-fppf
-
- Description:
- This repository includes a file containing polygon data for river channel data for eight study reaches (1, 2A, 2B, 2B short, 3A, 3B, 4A, 4B) across multiple years (1974, 1981, 1995, 2000, 2007 to 2017, and 2018 to 2022), along the Escalante River, Utah, USA. Each channel delineation is uniquely identified by year and reach. Historic imagery was collected from United States Geological Survey and Bureau of Land Management; sourced imagery was accessed through EarthExplorer ( https://earthexplorer.usgs.gov/#close); NAIP imagery from the USDA Geospatial Data Gateway ( https://datagateway.nrcs.usda.gov/GDGHome_DirectDownLoad.aspx); and ESRI imagery from World Imagery Wayback ( https://livingatlas.arcgis.com/wayback/#active=16681&mapCenter=-111.19835%2C37.64870%2C18)
- Keyword:
- Escalante River Watershed, Channel Delineation, GIS, and shapefiles
- Subject:
- Image processing, Water channels, Geographic Information Systems, and Rivers/streams
- Creator:
- McNeally, Phoebe, Scott, Michael L., Williams, Erin J., Friedman, Jonathan M. , and Spence, John R.
- Owner:
- Based Near Label Tesim:
- Escalante, Utah, United States
- Language:
- English
- Date Uploaded:
- 05/27/2025
- Date Modified:
- 05/29/2025
- Date Created:
- 2022 to 2023 (collected) and 1974, 1981, 1995, 2000, 2007 to 2017, 2018 to 2022 (sources)
- License:
- CC BY NC - Allows others to use and share your data non-commercially and with attribution.
- Resource Type:
- Dataset and Map or Cartographic Material
- Identifier:
- https://doi.org/10.7278/S5d-hyk0-w2kf
-
- Description:
- Data were collected from the free online available International Ionosphere Reference (IRI) database ( https://kauai.ccmc.gsfc.nasa.gov/instantrun/iri) for January 1, 2020. The data were then interpolated from 1km to our desired resolution of 0.1km. This is is profile used to simulate the 3D FDTD models to observe the propagation of power line harmonic radiation through the ionosphere.
- Keyword:
- Ionosphere and Inhomogeneous Ionosphere
- Subject:
- FDTD (mathematics), plasmas (physics) , and ionospheric electron density
- Creator:
- Pedgaonkar, Apoorva
- Owner:
- Based Near Label Tesim:
- Salt Lake City, Utah, United States
- Language:
- English
- Date Uploaded:
- 07/12/2024
- Date Modified:
- 09/06/2024
- Date Created:
- 2020-01-20
- License:
- Public Domain – This data is free of copyright restrictions (e.g. government sponsored data).
- Resource Type:
- Dataset
- Identifier:
- http://doi.org/10.7278/S5d-hpp0-g1wy
-
- Description:
- This dataset summarizes burial counts according to burial type (free, temporary, or perpetual) for the cemeteries of Père-Lachaise, Montmartre, and Montparnasse in Paris. The data covers the period of 1804 to 1840 and was derived from the digitized daily records of burial for the city of Paris, which are currently held in the Archives de Paris. See Registres journaliers d'inhumation https://archives.paris.fr/r/216/cimetieres). These data are organized by the number of each burial type recorded per page of the digitized records.
- Keyword:
- Paris, burial, Montparnasse, and Pere-Lachaise
- Subject:
- Paris, Montparnasse, and Père-Lachaise, Cimetière du
- Creator:
- Alexander, Kaylee P.
- Owner:
- Kaylee Alexander
- Based Near Label Tesim:
- Paris, Île-de-France, France
- Language:
- English
- Date Uploaded:
- 02/11/2023
- Date Modified:
- 06/03/2024
- Date Created:
- 2019-01-01 to 2021-01-01
- License:
- CC BY NC - Allows others to use and share your data non-commercially and with attribution.
- Resource Type:
- Dataset
- Identifier:
- https://doi.org/10.7278/S50d-d18q-yfzt
-
- Description:
- This dataset is based on the 1816, two-volume publication, Le champ du repos, ou le Cimetière Mont-Louis, dit du Père Delachaise. Compiled over the course of 1815 by MM. Roger and Roger (a father-son team), Le champ du repos contains the epitaphs and scale drawing of over 2000 monuments present in the cemetery of Père-Lachaise (Paris, France) by the end of 1815. The author of this dataset has combined the information from this volume (including demographics of the deceased drawn from epitaphs, visual characteristics of monuments, and the locations of monuments within the cemetery) with data from the digitized records of burial available from the Archives de Paris ( https://archives.paris.fr/r/216/cimetieres/). Thus, this dataset details every known monument present in the Cemetery of Père-Lachaise by the end of 1815 with information about the type of burial (free, temporary, or perpetual) that it marked.
- Keyword:
- Paris, France, tombstones, cemeteries, Pere-Lachaise, nineteenth centry, epitaphs, and monuments
- Subject:
- funerary structures, cemeteries, and nineteenth century (dates CE)
- Creator:
- Alexander, Kaylee P.
- Owner:
- Kaylee Alexander
- Language:
- English, French
- Date Uploaded:
- 01/27/2023
- Date Modified:
- 06/05/2024
- Date Created:
- 2021-01-01
- License:
- CC BY NC - Allows others to use and share your data non-commercially and with attribution.
- Resource Type:
- Dataset
- Identifier:
- https://doi.org/10.7278/S50d-4cbs-yrv1
-
- Description:
- The large lattice dynamics of lithium, driven by its low atomic mass, results in energetically similar structures and significant isotope effects under pressure, posing challenges to current theoretical models. Above 20 GPa and at low temperatures, lithium's electronic properties deviate from simple metallic behavior, with superconductivity emerging in a complex, pressure-dependent manner, alongside an unusual isotope effect. The structural phases of 7Li reported under these conditions are inconsistent across studies, and the structures of 6 Li remain unexamined. These gaps limit our understanding of the effects of pressure on lithium's electronic properties and the role of quantum lattice effects on its structural behavior under pressure. Here, we integrate experimental and theoretical approaches to investigate the low-temperature structural phase boundaries in lithium isotopes. We map the structural phase diagram of 7Li from 5 to 55 GPa and 15–75 K, identifying the sequence fcc→ℎ𝑅1→𝑐𝐼16. A pronounced isotope effect is observed, with 6Li shifting the fcc→ℎ𝑅1 phase boundary to lower pressures at 15 K. Density functional theory calculations further clarify how these structural changes affect superconducting properties, particularly emphasizing the role of the fcc→ℎ𝑅1 transition in lithium's superconductivity. Our findings offer insights into the unique behavior of lithium isotopes under pressure.
- Keyword:
- lithium isotopes
- Subject:
- Lithium--Isotopes
- Creator:
- Holle, William, Deemyad, Shanti, and Saffarian-Deemyad, Iren
- Owner:
- Madison Golden
- Date Uploaded:
- 02/13/2025
- Date Modified:
- 03/03/2025
- Date Created:
- 2019-10-10 to 2022-12-20
- License:
- CCO – As the data author, you are choosing to place your data into the public domain.
- Identifier:
- doi.org/10.7278/S5d-aq4d-1d3k