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Large Kraken2 database for Fungi

Description:

This dataset is a custom Kraken2 formatted database for the identification of Fungi from shotgun metagenomic data. Kraken2 is a k-mer based read classifier (Wood et al. 2019; https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1891-0). The dataset was built with the default k-mer length (k=35) from all publicly available fungal genomes at JGI Mycocosm ( https://mycocosm.jgi.doe.gov/mycocosm/home), and all archaea, bacteria, viral, plasmid, human, fungi, plant, and protozoa genomes, as well as the UniVec Core and nt reference database at NCBI ( https://www.ncbi.nlm.nih.gov/). The reference genomes and sequences were downloaded from JGI and NCBI in March 2020.

Keyword:

protozoa, Kraken2 database, plant, bacteria, genomes, fungi, human, archaea, plasmid, and virus

Subject:

Mycology and Genomics

Creator:

Bryn T.M. Dentinger

Owner:

Bryn Dentinger

Language:

English

Date Uploaded:

06/08/2022

Date Modified:

12/05/2023

Date Created:

2020-03-29

License:

CC BY NC - Allows others to use and share your data non-commercially and with attribution.

Resource Type:

Software or Program Code and Dataset

Identifier:

https://doi.org/10.7278/S50d-154b-fppf